BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB018F06SP1|AL427351
(1147 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig37 232 1e-60
3x_Contig1619 121 4e-27
3x_Contig1004 105 2e-22
>3x_Contig37
Length = 500
Score = 232 bits (104), Expect = 1e-60
Identities = 159/173 (91%), Gaps = 6/173 (3%)
Strand = Plus / Plus
Query: 97 gcatcgtccgaccgtatggtggcangncncgtccggggtaggttattataagcttcgctg 156
||||||||||||||||||| |||| | | ||||||||| |||||||||||||||||||||
Sbjct: 15 gcatcgtccgaccgtatgg-ggcatgtc-cgtccgggg-aggttattataagcttcgctg 71
Query: 157 caaattgtccatattattaataaataatawtattkggkgtttcttktaattcaccc--aa 214
||||||||||||||||||||||||||||| |||| || ||||||| ||||||||| |
Sbjct: 72 caaattgtccatattattaataaataataatattaggagtttcttgcaattcaccctata 131
Query: 215 tttactccccgccttttactaaagtaaaagcgcgaggataattatatatatat 267
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 132 tttactccccgccttttactaaagtaaaag-gcgaggataattatatatatat 183
>3x_Contig1619
Length = 7770
Score = 121 bits (54), Expect = 4e-27
Identities = 57/58 (98%)
Strand = Plus / Minus
Query: 2 ctcgtggataaattattgttaacctaactcattatctagtcgttgaacgttcttataa 59
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1340 ctcgtggataaattattgttaacctaactcattatctagtcgttgaacgtttttataa 1283
>3x_Contig1004
Length = 3994
Score = 105 bits (47), Expect = 2e-22
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 1088 ttttttttttttttttttttttttttttttttttttkgggggggggggggggggggg 1144
||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 3434 tttttattattttttttttttttttttttttttttttgggggggggggggggggggg 3490
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.55 0.736 1.45
Gapped
Lambda K H
1.55 0.736 1.45
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 81,976
Number of Sequences: 1807
Number of extensions: 81976
Number of successful extensions: 40306
Number of sequences better than 1.0e-20: 3
length of query: 1147
length of database: 10,358,551
effective HSP length: 15
effective length of query: 1132
effective length of database: 10,331,446
effective search space: 11695196872
effective search space used: 11695196872
T: 0
A: 40
X1: 5 (11.2 bits)
X2: 13 (29.0 bits)
S1: 10 (22.8 bits)
S2: 45 (101.0 bits)